- radius - Variable in class com.emphysic.myriad.core.data.ops.BlurOperation
-
Radius of the blur in points.
- random - Variable in class com.emphysic.myriad.core.ml.CrossValidation
-
RNG
- read(int) - Method in class com.emphysic.myriad.core.data.io.DicomDataset
-
Reads a specified frame from the DICOM file
- read() - Method in class com.emphysic.myriad.core.data.io.ImageDataset
-
Retrieves the data from the image.
- read(int) - Method in class com.emphysic.myriad.core.data.io.ImageDataset
-
For multi-image file formats, reads the image at the specified index.
- read() - Method in class com.emphysic.myriad.core.data.io.IODataset
-
By default IODatasets are lazy readers and won't read the contents of the file until directed.
- read() - Method in class com.emphysic.myriad.core.data.io.TextDataset
-
Reads the data file.
- read(File) - Static method in class com.emphysic.myriad.core.data.util.FileSniffer
-
Attempts to automatically identify the contents of the specified file.
- read(File, boolean) - Static method in class com.emphysic.myriad.core.data.util.FileSniffer
-
Attempts to automatically identify the contents in the specified file.
- read(Kryo, Input) - Method in interface com.emphysic.myriad.core.data.util.ObjectMap
-
Reads a Kryo-serialized object graph.
- readAsDICOM(File) - Method in class com.emphysic.myriad.core.data.util.FileSniffer
-
Reads a DICOM/DICONDE file.
- readAsImage(File) - Method in class com.emphysic.myriad.core.data.util.FileSniffer
-
Reads an image.
- readAsString(File, String, String) - Static method in class com.emphysic.myriad.core.data.io.TextDataset
-
Reads and returns an array of elements from a delimited ASCII stringData file.
- readAsText(File) - Method in class com.emphysic.myriad.core.data.util.FileSniffer
-
Reads a text file
- readData(DatasetOperation) - Method in class com.emphysic.myriad.core.ml.MLDataCompiler
-
Reads the positive and negative samples and compiles the resultant data.
- readData() - Method in class com.emphysic.myriad.core.ml.MLDataCompiler
-
Reads the positive and negative samples and compiles the resultant data.
- readFolder(File) - Static method in class com.emphysic.myriad.core.ml.MLDataCompiler
-
Reads all the Datasets from a given file folder.
- reduce(Dataset, GaussianPyramidOperation) - Static method in class com.emphysic.myriad.core.data.ops.PyramidOperations
-
Returns the next step in the specified Gaussian pyramid
- reduce(Dataset) - Static method in class com.emphysic.myriad.core.data.ops.PyramidOperations
-
Returns a reduction of the specified Dataset, 1/2 the size in each dimension and Gaussian blurred
- ReporterActor - Class in com.emphysic.myriad.network
-
ReporterActor - Akka actor that examines and acts upon ROIMessages
- ReporterActor() - Constructor for class com.emphysic.myriad.network.ReporterActor
-
- ReporterActorPool - Class in com.emphysic.myriad.network
-
ReporterActorPool - linked worker pool for examining Region Of Interest (ROI) results
TODO: convert to streaming reporting
- ReporterActorPool(int, Class<? extends ReporterActor>, Object...) - Constructor for class com.emphysic.myriad.network.ReporterActorPool
-
Creates a new pool.
- ReporterActorPool(int, Class<? extends ReporterActor>) - Constructor for class com.emphysic.myriad.network.ReporterActorPool
-
Creates a new pool
- ReporterActorPool(int) - Constructor for class com.emphysic.myriad.network.ReporterActorPool
-
Creates a new pool with the default ReporterActor
- ReporterActorPool() - Constructor for class com.emphysic.myriad.network.ReporterActorPool
-
Creates a new pool
- RESTROIFinder - Class in com.emphysic.myriad.core.data.roi
-
RESTROIFinder - makes calls to REST servers for detecting Regions Of Interest (ROI).
- RESTROIFinder(String) - Constructor for class com.emphysic.myriad.core.data.roi.RESTROIFinder
-
Constructor
- RESTROIFinder() - Constructor for class com.emphysic.myriad.core.data.roi.RESTROIFinder
-
Default constructor for serialization.
- rewind() - Method in class com.emphysic.myriad.core.data.io.ImageDataset
-
Resets the current frame to the first frame.
- ROI - Class in com.emphysic.myriad.core.data.roi
-
Region Of Interest (ROI) - an object, signal, anomaly, etc.
- ROI(Dataset, int, int...) - Constructor for class com.emphysic.myriad.core.data.roi.ROI
-
Creates a new Region of Interest from the specified data.
- ROI - Variable in class com.emphysic.myriad.network.messages.ROIMessage
-
Payload
- ROIActor - Class in com.emphysic.myriad.network
-
ROIActor - Akka actor that looks for Regions of Interest (ROI) in Datasets.
- ROIActor(ROIFinder) - Constructor for class com.emphysic.myriad.network.ROIActor
-
Creates a new ROIFinder with a specified ROI detector
- ROIBundle - Class in com.emphysic.myriad.core.data.roi
-
ROIBundle - bundles an ROIFinder, a preprocessing DatasetOperation, and assorted metadata into a single "black box"
Region Of Interest finder for easier serialization and distribution of trained models.
- ROIBundle(ROIFinder, DatasetOperation) - Constructor for class com.emphysic.myriad.core.data.roi.ROIBundle
-
- ROIBundle(ROIFinder) - Constructor for class com.emphysic.myriad.core.data.roi.ROIBundle
-
- ROIBundle() - Constructor for class com.emphysic.myriad.core.data.roi.ROIBundle
-
- ROIFinder - Interface in com.emphysic.myriad.core.data.roi
-
- ROIFinder - Variable in class com.emphysic.myriad.network.ROIActor
-
ROI finder
- ROIFinderPool - Class in com.emphysic.myriad.network
-
ROIFinderPool - linked worker pool of Region Of Interest (ROI) detectors
- ROIFinderPool(int, ROIFinder) - Constructor for class com.emphysic.myriad.network.ROIFinderPool
-
Creates a new ROIFinderPool.
- ROIFinderPool(ROIFinder) - Constructor for class com.emphysic.myriad.network.ROIFinderPool
-
Creates a new ROIFinderPool
- ROIfound(String) - Method in class com.emphysic.myriad.core.data.roi.ExternalROIFinder
-
Determines whether the specified message indicates a Region of Interest was found by the external ROI finder.
- ROIMessage - Class in com.emphysic.myriad.network.messages
-
ROIMessage - immutable message with a Region of Interest (ROI) payload.
- ROIMessage(ROI, String) - Constructor for class com.emphysic.myriad.network.messages.ROIMessage
-
Creates a new ROIMessage
- ROIMessage() - Constructor for class com.emphysic.myriad.network.messages.ROIMessage
-
Creates a new empty message
- ROIMessage(String) - Constructor for class com.emphysic.myriad.network.messages.ROIMessage
-
Creates a new message with no ROI
- ROIProbability - Interface in com.emphysic.myriad.core.data.roi
-
ROIProbability - the implementing class can return probabilities of a given sample being in a given class.
- rois - Variable in class com.emphysic.myriad.network.ReporterActorPool
-
List of Regions Of Interest (ROI) detected
- roundToCardinal(double) - Method in class com.emphysic.myriad.core.data.ops.CannyOperation
-
Rounds the specified angle in radians to the closest cardinal direction
- router - Variable in class com.emphysic.myriad.network.WorkerPool
-
Manages the workers
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.AbsoluteValueOperation
-
Returns a new Dataset comprised of the absolute value of the input's elements.
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.BinarizeOperation
-
Binarizes a Dataset - elements less than the threshold are set to 0, elements greater than the threshold
are set to 1.
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.BoxBlur
-
Performs a fast 2D box blur by implementing a separate vertical and horizontal blur.
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.CannyOperation
-
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.ChainedDatasetOperation
-
Runs each DatasetOperation in turn and returns the final result.
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.ConvolutionOperation
-
Convolves a Dataset.
- run(Dataset) - Method in interface com.emphysic.myriad.core.data.ops.DatasetOperation
-
Runs the operation on an input.
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.DifferenceOfGaussiansOperation
-
Performs both blur operations on an input, and returns a new Dataset consisting of the difference between the
two.
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.FeatureScalingOperation
-
Scales the input data by substracting the feature means and dividing by their standard deviations.
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.GaussianBlur
-
Performs a Gaussian blur on the input.
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.GaussianPyramidOperation
-
Blurs and subsamples the input data.
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.HOGOperation
-
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.NormalizeSignalOperation
-
Normalizes a Dataset by subtracting its minimum and dividing by the total range (max - min).
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.Otsu1dOperation
-
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.PowerOfTwoOperation
-
For each dimension in the input, if the dimension is not a power of 2 add elements of value 0 until this
condition is satisified.
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.ScalingOperation
-
Scales an input Dataset
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.SlidingWindowOperation
-
Slides across the input Dataset.
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.SobelOperation
-
Runs the Sobel operator on the input.
- run(Dataset) - Method in class com.emphysic.myriad.core.data.ops.UpscaleOperation
-
Upscales an input - doubles its size, approximates the new elements based on their neighbors.
- run() - Method in class com.emphysic.myriad.core.experimental.aparapi.kernels.ConvolutionKernel
-
- run(Dataset) - Method in class com.emphysic.myriad.core.experimental.aparapi.OCLConvolutionOperation
-
Runs the convolution operator on the specified input file.